Detailed information of SNP:
|
SNP ID:
sf0129597421(Gbrowse)
Chromosome: chr01 Position: 29597421 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 58.42% | 41.58% |
| All Indica | 787 | 30.88% | 69.12% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 364 | 46.98% | 53.02% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 210 | 25.24% | 74.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129597421 | A->G | INTERGENIC | None |