Detailed information of SNP:
|
SNP ID:
sf0129617751(Gbrowse)
Chromosome: chr01 Position: 29617751 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.37% | 36.63% |
| All Indica | 796 | 95.10% | 4.90% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129617751 | A->G | INTERGENIC | None |