Detailed information of SNP:
|
SNP ID:
sf0129624662(Gbrowse)
Chromosome: chr01 Position: 29624662 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 55.87% | 44.13% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129624662 | C->T | INTERGENIC | None |