Detailed information of SNP:
|
SNP ID:
sf0129716568(Gbrowse)
Chromosome: chr01 Position: 29716568 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 92.88% | 7.12% |
| All Indica | 786 | 89.19% | 10.81% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 368 | 84.24% | 15.76% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129716568 | C->T | INTERGENIC | None |