Detailed information of SNP:
|
SNP ID:
sf0129716884(Gbrowse)
Chromosome: chr01 Position: 29716884 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 92.70% | 7.30% |
| All Indica | 790 | 89.11% | 10.89% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 370 | 84.86% | 15.14% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129716884 | G->T | LOC_Os01g51680(LOC_Os01g51680.1) | Non-Synonymous SNP |