Detailed information of SNP:
|
SNP ID:
sf0129743581(Gbrowse)
Chromosome: chr01 Position: 29743581 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.59% | 30.41% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 494 | 17.61% | 82.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129743581 | A->G | INTERGENIC | None |