Detailed information of SNP:
SNP ID:
sf0129747754(Gbrowse)
Chromosome: chr01 Position: 29747754 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1357 | 96.09% | 3.91% |
All Indica | 744 | 93.41% | 6.59% |
All Japonica | 491 | 99.59% | 0.41% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 355 | 94.08% | 5.92% |
Indica II | 193 | 92.75% | 7.25% |
Indica Intermediate | 196 | 92.86% | 7.14% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 88 | 97.73% | 2.27% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0129747754 | G->A | INTERGENIC | None |