Detailed information of SNP:



SNP ID: sf0129747754(Gbrowse)

Chromosome: chr01

Position: 29747754
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1357 96.09% 3.91%
All Indica744 93.41% 6.59%
All Japonica491 99.59% 0.41%
Aus67 98.51% 1.49%
Indica I355 94.08% 5.92%
Indica II193 92.75% 7.25%
Indica Intermediate196 92.86% 7.14%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica88 97.73% 2.27%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129747754 G->A INTERGENIC None