Detailed information of SNP:
|
SNP ID:
sf0129747754(Gbrowse)
Chromosome: chr01 Position: 29747754 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 96.09% | 3.91% |
| All Indica | 744 | 93.41% | 6.59% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 355 | 94.08% | 5.92% |
| Indica II | 193 | 92.75% | 7.25% |
| Indica Intermediate | 196 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129747754 | G->A | INTERGENIC | None |