Detailed information of SNP:
|
SNP ID:
sf0129760688(Gbrowse)
Chromosome: chr01 Position: 29760688 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 96.67% | 3.33% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 489 | 91.41% | 8.59% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 55.17% | 44.83% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129760688 | G->A | LOC_Os01g51754(LOC_Os01g51754.1) | UTR_5_PRIME |
| sf0129760688 | G->A | LOC_Os01g51754(LOC_Os01g51754.4) | INTRON |
| sf0129760688 | G->A | LOC_Os01g51754(LOC_Os01g51754.2) | UTR_5_PRIME |