Detailed information of SNP:
|
SNP ID:
sf0129766575(Gbrowse)
Chromosome: chr01 Position: 29766575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.61% | 14.39% |
| All Indica | 798 | 77.69% | 22.31% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 56.42% | 43.58% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129766575 | G->A | LOC_Os01g51754(LOC_Os01g51754.1) | INTRON |
| sf0129766575 | G->A | LOC_Os01g51754(LOC_Os01g51754.2) | INTRON |