Detailed information of SNP:
|
SNP ID:
sf0129793171(Gbrowse)
Chromosome: chr01 Position: 29793171 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 70.96% | 29.04% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 491 | 18.94% | 81.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 89 | 48.31% | 51.69% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129793171 | T->G | LOC_Os01g51820(LOC_Os01g51820.1) | Non-Synonymous SNP |