Detailed information of SNP:
|
SNP ID:
sf0129860470(Gbrowse)
Chromosome: chr01 Position: 29860470 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 67.85% | 32.15% |
| All Indica | 794 | 95.72% | 4.28% |
| All Japonica | 496 | 17.74% | 82.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.50% | 3.50% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129860470 | C->T | LOC_Os01g51950(LOC_Os01g51950.1) | Non-Synonymous SNP |