Detailed information of SNP:
|
SNP ID:
sf0129862478(Gbrowse)
Chromosome: chr01 Position: 29862478 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 55.22% | 44.78% |
| All Indica | 789 | 33.21% | 66.79% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 53.49% | 46.51% |
| Indica II | 209 | 11.48% | 88.52% |
| Indica Intermediate | 208 | 18.75% | 81.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129862478 | C->G | LOC_Os01g51950(LOC_Os01g51950.1) | Non-Synonymous SNP |