Detailed information of SNP:
|
SNP ID:
sf0129863661(Gbrowse)
Chromosome: chr01 Position: 29863661 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 75.69% | 24.31% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129863661 | C->T | LOC_Os01g51950(LOC_Os01g51950.1) | SNPs that introduce stop codons |