Detailed information of SNP:



SNP ID: sf0129864483(Gbrowse)

Chromosome: chr01

Position: 29864483
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 50.39% 49.61%
All Indica796 25.63% 74.37%
All Japonica497 97.99% 2.01%
Aus67 1.49% 98.51%
Indica I375 48.53% 51.47%
Indica II211 1.90% 98.10%
Indica Intermediate210 8.57% 91.43%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 51.22% 48.78%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129864483 G->A LOC_Os01g51950(LOC_Os01g51950.1) Non-Synonymous SNP