Detailed information of SNP:
|
SNP ID:
sf0129864483(Gbrowse)
Chromosome: chr01 Position: 29864483 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.39% | 49.61% |
| All Indica | 796 | 25.63% | 74.37% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 211 | 1.90% | 98.10% |
| Indica Intermediate | 210 | 8.57% | 91.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129864483 | G->A | LOC_Os01g51950(LOC_Os01g51950.1) | Non-Synonymous SNP |