Detailed information of SNP:
|
SNP ID:
sf0129869935(Gbrowse)
Chromosome: chr01 Position: 29869935 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1311 | 94.05% | 5.95% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 391 | 80.05% | 19.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 247 | 69.23% | 30.77% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 96.36% | 3.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129869935 | C->T | INTERGENIC | None |