Detailed information of SNP:
|
SNP ID:
sf0129886753(Gbrowse)
Chromosome: chr01 Position: 29886753 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 70.53% | 29.47% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 489 | 17.38% | 82.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 0.91% | 99.09% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 65 | 13.85% | 86.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129886753 | A->G | INTERGENIC | None |