Detailed information of SNP:
|
SNP ID:
sf0129898948(Gbrowse)
Chromosome: chr01 Position: 29898948 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 78.93% | 21.07% |
| All Indica | 796 | 73.87% | 26.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 372 | 56.45% | 43.55% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129898948 | C->T | INTERGENIC | None |