Detailed information of SNP:
|
SNP ID:
sf0129900477(Gbrowse)
Chromosome: chr01 Position: 29900477 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 72.38% | 27.62% |
| All Indica | 798 | 72.81% | 27.19% |
| All Japonica | 487 | 84.80% | 15.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 329 | 99.39% | 0.61% |
| Tropical Japonica | 92 | 29.35% | 70.65% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129900477 | T->C | LOC_Os01g52020(LOC_Os01g52020.1) | INTRON |