Detailed information of SNP:
|
SNP ID:
sf0129913065(Gbrowse)
Chromosome: chr01 Position: 29913065 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 79.39% | 20.61% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 490 | 42.45% | 57.55% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 43.64% | 56.36% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129913065 | G->A | INTERGENIC | None |