Detailed information of SNP:



SNP ID: sf0129913065(Gbrowse)

Chromosome: chr01

Position: 29913065
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1412 79.39% 20.61%
All Indica799 99.87% 0.13%
All Japonica490 42.45% 57.55%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica330 43.64% 56.36%
Tropical Japonica93 17.20% 82.80%
Japonica Intermediate67 71.64% 28.36%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129913065 G->A INTERGENIC None