Detailed information of SNP:
|
SNP ID:
sf0129916087(Gbrowse)
Chromosome: chr01 Position: 29916087 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 82.70% | 17.30% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 52.53% | 47.47% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 57.06% | 42.94% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129916087 | C->T | INTERGENIC | None |