Detailed information of SNP:
|
SNP ID:
sf0129920496(Gbrowse)
Chromosome: chr01 Position: 29920496 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1263 | 52.73% | 47.27% |
| All Indica | 652 | 86.96% | 13.04% |
| All Japonica | 491 | 13.85% | 86.15% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 308 | 89.61% | 10.39% |
| Indica II | 179 | 89.94% | 10.06% |
| Indica Intermediate | 165 | 78.79% | 21.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 89 | 69.66% | 30.34% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129920496 | G->A | INTERGENIC | None |