Detailed information of SNP:



SNP ID: sf0129920496(Gbrowse)

Chromosome: chr01

Position: 29920496
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1263 52.73% 47.27%
All Indica652 86.96% 13.04%
All Japonica491 13.85% 86.15%
Aus67 19.40% 80.60%
Indica I308 89.61% 10.39%
Indica II179 89.94% 10.06%
Indica Intermediate165 78.79% 21.21%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica89 69.66% 30.34%
Japonica Intermediate67 7.46% 92.54%
Group VI/Aromatic14 21.43% 78.57%
Intermediate39 38.46% 61.54%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129920496 G->A INTERGENIC None