Detailed information of SNP:
|
SNP ID:
sf0129920503(Gbrowse)
Chromosome: chr01 Position: 29920503 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 90.49% | 9.51% |
| All Indica | 792 | 90.66% | 9.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 35.94% | 64.06% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129920503 | T->C | INTERGENIC | None |