Detailed information of SNP:
|
SNP ID:
sf0129932920(Gbrowse)
Chromosome: chr01 Position: 29932920 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 63.93% | 36.07% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 14.46% | 85.54% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 90 | 72.22% | 27.78% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129932920 | T->C | INTERGENIC | None |