Detailed information of SNP:



SNP ID: sf0129973463(Gbrowse)

Chromosome: chr01

Position: 29973463
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 93.02% 6.98%
All Indica799 95.24% 4.76%
All Japonica497 99.80% 0.20%
Aus67 14.93% 85.07%
Indica I375 98.13% 1.87%
Indica II213 97.65% 2.35%
Indica Intermediate211 87.68% 12.32%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129973463 C->T INTERGENIC None