Detailed information of SNP:
|
SNP ID:
sf0129975271(Gbrowse)
Chromosome: chr01 Position: 29975271 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 63.64% | 36.36% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 458 | 17.47% | 82.53% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 308 | 0.32% | 99.68% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 61 | 13.11% | 86.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129975271 | A->G | INTERGENIC | None |