Detailed information of SNP:
|
SNP ID:
sf0129976685(Gbrowse)
Chromosome: chr01 Position: 29976685 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 68.92% | 31.08% |
| All Indica | 783 | 99.49% | 0.51% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 99.46% | 0.54% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 203 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129976685 | A->G | INTERGENIC | None |