Detailed information of SNP:
|
SNP ID:
sf0130037111(Gbrowse)
Chromosome: chr01 Position: 30037111 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 89.72% | 10.28% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 488 | 71.93% | 28.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 328 | 67.07% | 32.93% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130037111 | A->G | LOC_Os01g52250(LOC_Os01g52250.1) | Non-Synonymous SNP |
| sf0130037111 | A->G | LOC_Os01g52250(LOC_Os01g52250.3) | Non-Synonymous SNP |
| sf0130037111 | A->G | LOC_Os01g52250(LOC_Os01g52250.5) | Non-Synonymous SNP |
| sf0130037111 | A->G | LOC_Os01g52250(LOC_Os01g52250.4) | Non-Synonymous SNP |
| sf0130037111 | A->G | LOC_Os01g52250(LOC_Os01g52250.6) | Non-Synonymous SNP |
| sf0130037111 | A->G | LOC_Os01g52250(LOC_Os01g52250.2) | Non-Synonymous SNP |