Detailed information of SNP:
|
SNP ID:
sf0130043949(Gbrowse)
Chromosome: chr01 Position: 30043949 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 60.95% | 39.05% |
| All Indica | 795 | 98.49% | 1.51% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 48 | 97.92% | 2.08% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130043949 | A->C | INTERGENIC | None |