Detailed information of SNP:
|
SNP ID:
sf0130091114(Gbrowse)
Chromosome: chr01 Position: 30091114 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.02% | 48.98% |
| All Indica | 795 | 17.74% | 82.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 12.87% | 87.13% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130091114 | T->A | LOC_Os01g52380(LOC_Os01g52380.1) | Non-Synonymous SNP |