Detailed information of SNP:
|
SNP ID:
sf0130093576(Gbrowse)
Chromosome: chr01 Position: 30093576 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 57.08% | 42.92% |
| All Indica | 796 | 91.46% | 8.54% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130093576 | C->T | INTERGENIC | None |