Detailed information of SNP:
|
SNP ID:
sf0130106729(Gbrowse)
Chromosome: chr01 Position: 30106729 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 56.49% | 43.51% |
| All Indica | 785 | 90.32% | 9.68% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 368 | 89.67% | 10.33% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130106729 | T->C | INTERGENIC | None |