Detailed information of SNP:
|
SNP ID:
sf0130117965(Gbrowse)
Chromosome: chr01 Position: 30117965 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.96% | 34.04% |
| All Indica | 798 | 41.85% | 58.15% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 210 | 48.10% | 51.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130117965 | G->A | INTERGENIC | None |