Detailed information of SNP:
|
SNP ID:
sf0130121476(Gbrowse)
Chromosome: chr01 Position: 30121476 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.34% | 37.66% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130121476 | T->C | INTERGENIC | None |