Detailed information of SNP:
|
SNP ID:
sf0130136811(Gbrowse)
Chromosome: chr01 Position: 30136811 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.60% | 37.40% |
| All Indica | 798 | 38.97% | 61.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 59.63% | 40.37% |
| Indica II | 213 | 2.82% | 97.18% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130136811 | G->A | INTERGENIC | None |