Detailed information of SNP:
|
SNP ID:
sf0130153133(Gbrowse)
Chromosome: chr01 Position: 30153133 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 95.66% | 4.34% |
| All Indica | 765 | 94.25% | 5.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 359 | 96.38% | 3.62% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 195 | 86.15% | 13.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130153133 | C->T | INTERGENIC | None |