Detailed information of SNP:
|
SNP ID:
sf0130238679(Gbrowse)
Chromosome: chr01 Position: 30238679 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 86.97% | 13.03% |
| All Indica | 740 | 77.03% | 22.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 321 | 60.44% | 39.56% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 81.55% | 18.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130238679 | T->C | LOC_Os01g52600(LOC_Os01g52600.1) | INTRON |