Detailed information of SNP:
|
SNP ID:
sf0130266453(Gbrowse)
Chromosome: chr01 Position: 30266453 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 60.21% | 39.79% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130266453 | C->T | INTERGENIC | None |