Detailed information of SNP:
|
SNP ID:
sf0130289406(Gbrowse)
Chromosome: chr01 Position: 30289406 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.15% | 35.85% |
| All Indica | 798 | 39.22% | 60.78% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130289406 | C->A | INTERGENIC | None |