Detailed information of SNP:
|
SNP ID:
sf0130340167(Gbrowse)
Chromosome: chr01 Position: 30340167 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 57.04% | 42.96% |
| All Indica | 797 | 34.38% | 65.62% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 213 | 2.35% | 97.65% |
| Indica Intermediate | 209 | 26.32% | 73.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130340167 | G->A | LOC_Os01g52740(LOC_Os01g52740.1) | INTRON |