Detailed information of SNP:
|
SNP ID:
sf0130350285(Gbrowse)
Chromosome: chr01 Position: 30350285 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 51.83% | 48.17% |
| All Indica | 775 | 91.23% | 8.77% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 195 | 83.08% | 16.92% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130350285 | T->C | INTERGENIC | None |