Detailed information of SNP:
|
SNP ID:
sf0130350591(Gbrowse)
Chromosome: chr01 Position: 30350591 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 54.79% | 45.21% |
| All Indica | 768 | 96.88% | 3.12% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 187 | 91.98% | 8.02% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130350591 | C->T | INTERGENIC | None |