Detailed information of SNP:
|
SNP ID:
sf0130351337(Gbrowse)
Chromosome: chr01 Position: 30351337 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.41% | 35.59% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130351337 | C->A | LOC_Os01g52760(LOC_Os01g52760.2) | INTRON |
| sf0130351337 | C->A | LOC_Os01g52760(LOC_Os01g52760.1) | INTRON |