Detailed information of SNP:
|
SNP ID:
sf0130363043(Gbrowse)
Chromosome: chr01 Position: 30363043 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.60% | 37.40% |
| All Indica | 797 | 37.64% | 62.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 57.75% | 42.25% |
| Indica II | 213 | 2.35% | 97.65% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130363043 | T->A | LOC_Os01g52780(LOC_Os01g52780.1) | UTR_3_PRIME |
| sf0130363043 | T->A | LOC_Os01g52770(LOC_Os01g52770.1) | UTR_3_PRIME |