Detailed information of SNP:



SNP ID: sf0130416452(Gbrowse)

Chromosome: chr01

Position: 30416452
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 54.16% 45.84%
All Indica798 29.07% 70.93%
All Japonica497 99.80% 0.20%
Aus67 2.99% 97.01%
Indica I374 47.86% 52.14%
Indica II213 1.88% 98.12%
Indica Intermediate211 23.22% 76.78%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0130416452 C->T INTERGENIC None