Detailed information of SNP:
|
SNP ID:
sf0130416452(Gbrowse)
Chromosome: chr01 Position: 30416452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.16% | 45.84% |
| All Indica | 798 | 29.07% | 70.93% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 47.86% | 52.14% |
| Indica II | 213 | 1.88% | 98.12% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130416452 | C->T | INTERGENIC | None |