Detailed information of SNP:



SNP ID: sf0130431061(Gbrowse)

Chromosome: chr01

Position: 30431061
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 64.53% 35.47%
All Indica798 38.85% 61.15%
All Japonica497 99.60% 0.40%
Aus67 98.51% 1.49%
Indica I375 58.40% 41.60%
Indica II213 4.23% 95.77%
Indica Intermediate210 39.05% 60.95%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0130431061 C->T INTERGENIC None