Detailed information of SNP:
SNP ID:
sf0130431061(Gbrowse)
Chromosome: chr01 Position: 30431061 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 64.53% | 35.47% |
All Indica | 798 | 38.85% | 61.15% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 58.40% | 41.60% |
Indica II | 213 | 4.23% | 95.77% |
Indica Intermediate | 210 | 39.05% | 60.95% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0130431061 | C->T | INTERGENIC | None |