Detailed information of SNP:
|
SNP ID:
sf0130499701(Gbrowse)
Chromosome: chr01 Position: 30499701 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 51.10% | 48.90% |
| All Indica | 793 | 87.39% | 12.61% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 207 | 80.68% | 19.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130499701 | C->T | INTERGENIC | None |