Detailed information of SNP:
|
SNP ID:
sf0130551399(Gbrowse)
Chromosome: chr01 Position: 30551399 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 90.44% | 9.56% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 470 | 74.04% | 25.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 313 | 67.09% | 32.91% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130551399 | T->C | LOC_Os01g53170(LOC_Os01g53170.1) | Synonymous |