Detailed information of SNP:
|
SNP ID:
sf0130554273(Gbrowse)
Chromosome: chr01 Position: 30554273 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.59% | 29.41% |
| All Indica | 798 | 49.50% | 50.50% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 61.50% | 38.50% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130554273 | A->G | INTERGENIC | None |