Detailed information of SNP:
|
SNP ID:
sf0130563904(Gbrowse)
Chromosome: chr01 Position: 30563904 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 67.94% | 32.06% |
| All Indica | 790 | 52.28% | 47.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 368 | 41.03% | 58.97% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130563904 | G->C | INTERGENIC | None |