Detailed information of SNP:
|
SNP ID:
sf0130587089(Gbrowse)
Chromosome: chr01 Position: 30587089 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130587089 | A->T | INTERGENIC | None |